Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs36059082 chr20:2060994 C/G 3.36E-7 492 28.8 33.47 29.55 KM Plot
PRAD rs36066920 chr2:239074480 T/G 1.73E-8 478 31.4 28.63 31.68 KM Plot
PRAD rs36098350 chr2:131722342 C/G 1.44E-6 485 31 31.4 19.3 KM Plot
PRAD rs36106459 chr16:5003509 C/T 4.55E-5 475 31.35 29.63 27.77 KM Plot
PRAD rs36117364 chr8:143441309 G/A 1.17E-5 491 30.57 31.65 28.77 KM Plot
PRAD rs36121526 chr2:178787420 T/C 4.15E-5 493 30.78 31.93 20.48 KM Plot
PRAD rs363080 chr4:3133911 C/T 6.46E-7 488 30.8 31.43 29.17 KM Plot
PRAD rs363107 chr4:3144441 A/G 8.32E-7 490 30.8 31.42 26.72 KM Plot
PRAD rs368590456 chr1:93632159 AATTAG/A 1.07E-8 494 31.3 28.4 9.17 KM Plot
PRAD rs369924160 chr2:232082700 CTTGT/C 7.41E-5 487 32.23 28.77 31.13 KM Plot
PRAD rs370635626 chr1:1161129 T/C 2.41E-10 482 31.28 29.1 13.73 KM Plot
PRAD rs370684548 chr7:135193678 GA/G 2.11E-9 485 30.8 32.52 8.75 KM Plot
PRAD rs370923055 chr5:154295454 ATTAT/A 0 493 30.33 32.4 4.87 KM Plot
PRAD rs371033477 chr11:51539330 GT/G 7.53E-8 484 31.3 28.13 21.18 KM Plot
PRAD rs371759279 chr7:6742093 C/A 3.05E-7 493 31.13 26.7 50.03 KM Plot